BP_GCCALC(1) User Contributed Perl Documentation BP_GCCALC(1) NAME gccalc - GC content of nucleotide sequences SYNOPSIS gccalc [-f/--format FORMAT] [-h/--help] filename or gccalc [-f/--format FORMAT] < filename or gccalc [-f/--format FORMAT] -i filename DESCRIPTION This scripts prints out the GC content for every nucleotide sequence from the input file. OPTIONS The default sequence format is fasta. The sequence input can be provided using any of the three methods: unnamed argument gccalc filename named argument gccalc -i filename standard input gccalc < filename FEEDBACK Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://bugzilla.open-bio.org/ AUTHOR - Jason Stajich Email jason@bioperl.org HISTORY Based on script code (see bottom) submitted by cckim@stanford.edu Submitted as part of bioperl script project 2001/08/06 perl v5.14.1 2011-07-22 BP_GCCALC(1)[top]
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