BP_DOWNLOAD_QUERY_GENBUser1Contributed Perl DocumeBP_DOWNLOAD_QUERY_GENBANK(1)NAME
download_query_genbank - script to query Genbank and retrieve records
USAGE
download_query_genbank --query "Neurospora[ORGN]" --db nucest -o Ncrassa_ESTs.fa --format fasta
download_query_genbank --queryfile 'filewithquery' --db nucest -o Ncrassa_ESTs.fa --format fasta
Other options
Provide ONE of:
--query query string OR
--queryfile profile file with query OR
--gi --gifile file with list of GIs to download
Database type:
--db database (nucest, protein, nucleotide)
-f --format sequence file output format
-v --verbose debugging output
Query options
--maxids maximum number of IDs to retrieve in a set
--reldate
--maxdate maxdate for a record
--mindate minimum date for record
--datetype edat or mdat (entered or modified)
AUTHOR Jason Stajich
Jason Stajich, jason-AT-bioperl.org
perl v5.14.1 2011-07-22 BP_DOWNLOAD_QUERY_GENBANK(1)